FastQCFastQC Report
Wed 8 May 2024
EGAF00005318311

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005318311
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3239850
Total Bases241.9 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT189210.5840085189129126No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN96830.29887186135160576No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTG93190.28763677330740617No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGA43560.13445066901245428No Hit
CGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT41770.12892572186983964No Hit
GGCGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT36530.11275213358643146No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)