EGAF00005318312 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318312
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3250328
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	19330	0.5947092108857936	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	9951	0.30615371740944297	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	6425	0.19767235798971672	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	6415	0.1973646967321452	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	5319	0.163645022902304	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	5025	0.1545997819297006	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	4315	0.13275583264212104	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	3988	0.12269530951953156	No Hit
GTGGCTTAGGAGCTTGAAGTTGACCGGGTCCACCCGAAGCTTGTGCGCGT	3425	0.10537398071825367	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	5665	0.0	36.37641	32
GCGGCAC	5890	0.0	35.06578	33
TCGCCGG	5800	0.0	33.943718	48
CGGCACC	6185	0.0	33.299854	34
CCCGTCG	5985	0.0	32.908115	44
CCGTCGC	6010	0.0	32.56824	45
GCACCCC	6720	0.0	30.735245	36
CCCCCGA	6800	0.0	30.591108	19
TAGTCCG	450	0.0	30.57819	6
ACCCGCG	6920	0.0	29.981258	25
AGTCCGC	6960	0.0	29.95305	7
CACCCCC	7045	0.0	29.63146	37
CCCCGAC	7020	0.0	29.597527	20
CCGCGCG	7170	0.0	29.054226	27
CAGTCCG	6775	0.0	28.992863	6
TCCGCCC	7400	0.0	28.77641	9
GTCCGCC	7355	0.0	28.484743	8
GGCACCC	7325	0.0	28.182661	35
CGTTGCG	110	3.7298378E-8	28.178446	1
CCCCCGT	7045	0.0	27.776566	42