EGAF00005318314 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318314
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3347665
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	19735	0.5895153786295821	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	10136	0.3027782051071419	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	6515	0.19461326028739434	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	6486	0.19374698483868605	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	5508	0.1645325921201793	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	5158	0.15407754360128625	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	4464	0.13334667596668126	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	4042	0.12074087460961595	No Hit
GTGGCTTAGGAGCTTGAAGTTGACCGGGTCCACCCGAAGCTTGTGCGCGT	3426	0.10233998921636424	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	5970	35.797966	32
GCGGCAC	6150	34.657974	33
TCGCCGG	6120	34.173153	48
CGGCACC	6345	33.6106	34
CCGTCGC	6265	33.313717	45
CCCGTCG	6345	33.034096	44
ACCCGCG	6890	31.610184	25
CGTACGT	165	31.300268	19
CCCCCGA	7015	31.166412	19
GCACCCC	7025	30.640093	36
TAGTCCG	455	30.240273	6
CCCCGAC	7255	30.053564	20
CCGCGCG	7250	30.016432	27
AGTCCGC	7350	29.858667	7
CACCCCC	7300	29.598864	37
CAGTCCG	7050	29.226364	6
GTCCGCC	7595	28.940775	8
GGCACCC	7540	28.530905	35
TCCGCCC	7810	28.496422	9
CGTCGCC	7460	28.089634	46