FastQCFastQC Report
Wed 8 May 2024
EGAF00005318315

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005318315
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3347665
Total Bases250 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT196790.5878425708665592No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN100020.2987754151027657No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTG98720.29489211136717686No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGA44450.13277911618994134No Hit
CGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT43170.1289555555887462No Hit
GGCGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT38400.11470681803585484No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)