EGAF00005318316 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318316
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3307941
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	19217	0.5809353915320739	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	9848	0.2977078490819516	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	6506	0.1966782357968295	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	6334	0.19147862673487828	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	5488	0.16590380541853678	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	5113	0.15456744845207335	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	4382	0.13246910993878067	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	3993	0.1207095289789026	No Hit
GTGGCTTAGGAGCTTGAAGTTGACCGGGTCCACCCGAAGCTTGTGCGCGT	3345	0.10112030414085378	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	5920	0.0	37.08639	32
GCGGCAC	6095	0.0	36.041916	33
TTACGCG	50	1.8948411E-4	34.398037	15
CGGCACC	6405	0.0	34.365242	34
TCGCCGG	6195	0.0	33.299717	48
CCCGTCG	6315	0.0	33.069447	44
CCGTCGC	6290	0.0	32.949566	45
GTTCCGT	305	0.0	32.75599	1
GCACCCC	6935	0.0	31.973528	36
TACGCGA	65	2.369811E-5	31.752996	16
CCCCCGA	7070	0.0	31.1737	19
CACCCCC	7245	0.0	30.911726	37
ACCCGCG	7170	0.0	30.569294	25
AGTCCGC	7265	0.0	30.303848	7
CAGTCCG	7010	0.0	30.081251	6
CCCCGAC	7375	0.0	29.852283	20
CCGCGCG	7430	0.0	29.661957	27
GGCACCC	7510	0.0	29.65005	35
GTCCGCC	7500	0.0	29.262594	8
TCCGCCC	7800	0.0	28.79864	9