EGAF00005318324 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318324
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4441714
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	56

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	21540	0.48494792775941903	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	10258	0.23094688221709006	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	8240	0.18551397050778146	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	6907	0.1555030332885008	No Hit
CGTTTGAATATTTGCTACTACCACCAAGATCTGCACCTGCGGCGGCTCCACCCGGGCCCGCGCCCTAGGCTTCA	6139	0.13821241079457164	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	6104	0.13742442669654104	No Hit
GTGGGGTGGGGGTGGGGGGGGCGCGCCGGCGCCCGCCGGGCTCCCCGGGG	4637	0.10439663607337167	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGGCAC	6870	36.541573	33
CGCGGCA	6910	36.016758	32
TCGCCGG	6660	35.318153	48
CCCGTCG	6660	35.169968	44
CCGTCGC	6680	35.08899	45
CGGCACC	7240	34.209778	34
AGGACCG	1005	32.510006	70
GCACCCC	7685	32.435577	36
CACCCCC	8015	31.114555	37
CGTTGCG	200	31.112307	1
CCCCCGA	8225	30.676441	19
ACCCGCG	8445	29.743973	25
GGCACCC	8390	29.654976	35
AGTCCGC	8815	28.653984	7
CAGTCCG	8510	28.261778	6
TCCGCCC	9365	27.855455	9
GTCCGCC	9210	27.425066	8
TTATCGG	290	27.36693	7
GTTCCGT	380	27.291496	1
CGCCCTA	2570	27.199867	61