EGAF00005318326 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318326
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4048994
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	25954	0.6409987270912232	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	22717	0.5610529430273298	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	9130	0.22548810889816087	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	6660	0.1644853017811338	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	4701	0.11610291346443093	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	4583	0.11318860931875917	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	4128	0.10195125011299103	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	7330	38.400787	32
GCGGCAC	7515	37.588074	33
CGGCACC	7820	36.159416	34
TCGCCGG	7505	35.5905	48
CCCGTCG	7670	34.97354	44
CCGTCGC	7625	34.90026	45
CCCCCGA	8485	33.293953	19
GCACCCC	8685	32.70005	36
ACCCGCG	8935	31.722715	25
CACCCCC	8975	31.712555	37
GGCACCC	9280	30.689163	35
CCCCCGT	8890	30.066065	42
CCCCGAC	9505	29.707745	20
TAGTCCG	445	29.100342	6
AGTCCGC	9755	28.785545	7
AGGAGGG	13645	28.48795	70
CCGCGCG	10020	28.302286	27
CAGTCCG	9535	28.234552	6
CGTCGCC	9495	28.095959	46
TCCGCCC	10430	27.803072	9