EGAF00005318330 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318330
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4205585
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	28098	0.6681115706851721	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	23528	0.5594465454865375	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	10000	0.23777904857469295	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	7223	0.17174780678550072	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	4965	0.11805729761733505	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	4692	0.11156592959124592	No Hit
GGGGGCAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	4507	0.10716701719261411	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	4248	0.10100853983452955	No Hit
TGGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCAC	4229	0.10055675964223765	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	8225	37.617496	32
GCGGCAC	8425	36.88052	33
CGGCACC	8745	35.572803	34
TCGCCGG	8390	34.97841	48
CCCGTCG	8480	34.507988	44
CCGTCGC	8590	33.98776	45
CCCCCGA	9450	32.894943	19
GCACCCC	9655	32.542774	36
ACCCGCG	9840	31.69775	25
GGCACCC	10010	31.320488	35
CACCCCC	10125	31.062374	37
CCCCGAC	10430	29.788881	20
CCCCCGT	9945	29.328314	42
AGGAGGG	14570	28.512049	70
CCGCGCG	11185	28.031424	27
AGTCCGC	11265	27.928934	7
CAGTCCG	10840	27.577456	6
CGTCGCC	10680	27.474062	46
CGCCCTA	1690	27.300245	61
TCCGCCC	11950	27.212246	9