FastQCFastQC Report
Wed 8 May 2024
EGAF00005318333

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005318333
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4162567
Total Bases308 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC57

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT251290.6036899826477268No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN229430.5511743114285007No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTG58800.14125898754302335No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGA57950.13921697836935717No Hit
CGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT54880.13184172170682176No Hit
GGCGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT48990.1176917993151822No Hit
GGGGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCC45200.10858684076436487No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)