EGAF00005318343 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318343
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3302877
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	20258	0.6133440633726294	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	16752	0.5071941825263248	No Hit
GGGGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG	10735	0.32501967224332	No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTT	8461	0.25617060520267637	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	7090	0.2146613391900455	No Hit
CGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	4490	0.13594208927550133	No Hit
GGCGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	3944	0.11941104679344704	No Hit
CGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	3742	0.11329516660777861	No Hit
GGCGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	3371	0.1020625351776648	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCTACGG	2315	60.297348	5
TACGGCC	2345	59.234344	7
GTCTACG	2375	58.774048	4
CTACGGC	2430	57.86719	6
GCGCGGT	9375	54.91245	9
GCCGGTT	1280	53.853577	3
TGGCGCG	9670	53.12601	15
ACGGCCA	2625	52.91601	8
CGCGGTG	9775	52.73557	10
CCGAACT	1335	52.66441	67
CGGCCAT	2695	51.541573	9
CCGGTTC	1365	50.75438	4
GGTCTAC	2275	50.650803	3
GCCATAC	2765	49.858547	11
CCTGGTT	4240	49.464886	70
CGGTTCA	1420	49.271595	5
CGGCATA	260	49.05123	1
CGAACTT	1495	48.539368	68
GGGTCTA	2265	46.786304	2
GAACGCG	2950	46.635166	24