FastQCFastQC Report
Wed 8 May 2024
EGAF00005318346

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005318346
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3290179
Total Bases245.5 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG182300.5540731978412117No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN70520.2143348431802647No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG57970.17619102182586419No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGT51070.15521951845173165No Hit
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG41470.12604177462685162No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG34930.10616443664615209No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)