EGAF00005318358 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318358
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3798834
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	56

Per base quality graph

Per base quality graph

$Per Sequence quality graph$

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	23489	0.6183213059586178	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	9424	0.24807612019898737	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	9341	0.24589123925920428	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	7297	0.19208525563370232	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	6227	0.16391871821722137	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	5003	0.13169830532210675	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	4756	0.12519631023624617	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	4612	0.1214056734250562	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	4431	0.11664105354432439	No Hit
TGGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCAC	4140	0.10898080832171134	No Hit
GTGGCTTAGGAGCTTGAAGTTGACCGGGTCCACCCGAAGCTTGTGCGCGT	4043	0.106427393247507	No Hit
GGGGGCAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	3819	0.10053084709676706	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	6960	0.0	38.62938	32
GCGGCAC	7165	0.0	37.540585	33
CGGCACC	7260	0.0	36.96761	34
CCGTCGC	7070	0.0	35.869926	45
TCGCCGG	7095	0.0	35.52356	48
CCCGTCG	7150	0.0	35.493176	44
GCACCCC	7820	0.0	34.486786	36
CTACCGG	150	5.5479177E-10	33.32064	70
CACCCCC	8175	0.0	33.133312	37
GGCACCC	8350	0.0	32.19968	35
CCCCCGA	8355	0.0	32.098476	19
ACCCGCG	8420	0.0	31.880062	25
TTATCGG	180	0.0	30.613615	7
CGTAGCG	540	0.0	30.612402	9
CCCCGAC	8905	0.0	30.126719	20
GTAGCGT	565	0.0	29.25787	10
CCCCCGT	8700	0.0	29.136213	42
AGTCCGC	9595	0.0	28.248596	7
TAGCGTC	590	0.0	28.018131	11
CGTCGCC	9090	0.0	27.960375	46