FastQCFastQC Report
Wed 8 May 2024
EGAF00005318359

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005318359
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3798834
Total Bases284 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT157130.41362691815436003No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN92420.24328517645151115No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTG80370.2115649170245396No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC58150.15307328511853902No Hit
GGGGACTCTTCTGGTCCGCACAGACTCAGAGAGAACCCACCATGGTGCTG41890.1102706777921857No Hit
GGGGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCC38350.10095202896467706No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGA38160.10045187549653393No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)