EGAF00005318359 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318359
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3798834
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	58

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	9242	0.24328517645151115	No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	7604	0.2001666827242254	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	7377	0.1941911649732523	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	6935	0.18255601587223869	No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC	5809	0.15291534191807277	No Hit
GGGGACTCTTCTGGTCCGCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	3969	0.10447942710842327	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGCGGT	4115	47.944397	9
TGGCGCG	4390	45.334396	15
CGCGGTG	4750	41.60802	10
CCGAACT	715	40.867603	67
GCCGGTT	765	40.511654	3
CGGCATA	300	40.313976	1
TGGTCCG	1230	40.030907	12
TCTGGTC	3550	39.475246	10
CTACTCG	5070	39.319126	37
TACTCGG	5045	39.25794	38
GGGGACT	4165	38.6616	1
ACTCTTC	3700	38.61937	5
CGGTTCA	790	38.354324	5
CGTGCCT	5320	37.9798	20
ACTCGGG	5480	37.11401	39
GGACTCT	3975	37.077084	3
GGGACTC	4105	36.996338	2
GTAGTCC	5490	36.892464	27
TAGTCCC	5570	36.499268	28
GGGGTAG	1580	36.08575	1