EGAF00005318360 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318360
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3768236
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	56

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	25067	0.6652184205023252	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	9841	0.2611566791464229	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	9004	0.2389446945467322	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	7412	0.1966968098601043	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	6671	0.1770324363972957	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	5027	0.13340459567819002	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	4866	0.12913203950071067	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	4518	0.11989694912951311	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	4394	0.11660628474437376	No Hit
GGGGGCAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	4112	0.10912267702978265	No Hit
TGGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCAC	4094	0.10864499994161723	No Hit
GTGGCTTAGGAGCTTGAAGTTGACCGGGTCCACCCGAAGCTTGTGCGCGT	3986	0.1057789374126249	No Hit
AGGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCAC	3838	0.10185137024326502	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	7420	37.032784	32
GCGGCAC	7755	35.452984	33
CGGCACC	7945	34.58143	34
TCGCCGG	7685	34.08265	48
CCCGTCG	7735	33.95233	44
CCGTCGC	7810	33.426426	45
GCACCCC	8615	32.090054	36
CCCCCGA	8755	31.934511	19
ACCCGCG	8935	31.121864	25
CACCCCC	9040	30.830112	37
GGCACCC	8995	30.639482	35
CCCCGAC	9345	29.740597	20
CCCCCGT	9120	28.681828	42
GTTATCG	205	28.550797	6
AGTCCGC	10195	27.48909	7
CCGCGCG	10195	27.261644	27
CAGTCCG	10050	26.926485	6
CGTCGCC	9785	26.767595	46
CCCGACC	10420	26.713272	21
GTCCGCC	10505	26.677895	8