FastQCFastQC Report
Wed 8 May 2024
EGAF00005318365

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005318365
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3737706
Total Bases279.6 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC58

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT152290.40744242591578894No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN85050.22754598676300383No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTG84890.22711791671148024No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC54600.14607890508242222No Hit
GGGGACTCTTCTGGTCCGCACAGACTCAGAGAGAACCCACCATGGTGCTG42540.11381312494883225No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGA37990.10163988285863039No Hit
GGGGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCC37940.10150611096752928No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)