EGAF00005318374 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318374
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4021093
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	26178	0.6510170244756837	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	11240	0.27952598957547115	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	8485	0.2110122794971417	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	7441	0.1850491893621958	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	6863	0.170674988118902	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	6765	0.1682378398112155	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	6073	0.151028588495715	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	5805	0.1443637339400009	No Hit
GTGCGCGTGCAGGTCGCTCAGGGCGGACAGCGCGTTGGGCATGTCGTCCA	5235	0.13018848357896723	No Hit
GTGGCTTAGGAGCTTGAAGTTGACCGGGTCCACCCGAAGCTTGTGCGCGT	4699	0.11685877446753906	No Hit
GGGGGTACGGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGG	4671	0.11616244637962864	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	7335	37.44914	32
GCGGCAC	7640	36.157238	33
CGGCACC	7860	35.167263	34
TCGCCGG	7425	35.085434	48
CCCGTCG	7600	34.368916	44
CCGTCGC	7780	33.418076	45
TGGCCGT	1535	32.38167	70
GCACCCC	8655	32.287155	36
CCCCCGA	8555	32.127384	19
ACCCGCG	8570	31.863325	25
CACCCCC	8735	31.611124	37
CCCCGAC	8820	31.1726	20
CCGCGCG	9205	29.613935	27
GGCACCC	9365	29.604279	35
CGTCGCC	9080	28.728928	46
GCGCGGG	9215	28.644817	62
CCCCCGT	9090	28.548311	42
GTTCCGT	405	28.145533	1
CCCGCGC	9775	27.944147	26
AGTCCGC	10135	27.37163	7