EGAF00005318376 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318376
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4003426
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	25777	0.643873522328126	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	11034	0.27561393666324796	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	8224	0.20542405429749422	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	7371	0.18411730352952696	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	6891	0.17212757273395335	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	6802	0.16990447681560744	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	6158	0.15381825466487953	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	5619	0.14035478612568333	No Hit
GTGCGCGTGCAGGTCGCTCAGGGCGGACAGCGCGTTGGGCATGTCGTCCA	5176	0.1292892637456019	No Hit
GGGGGTACGGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGG	4706	0.11754931900826943	No Hit
GTGGCTTAGGAGCTTGAAGTTGACCGGGTCCACCCGAAGCTTGTGCGCGT	4700	0.11739944737332475	No Hit
GGGGGCAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	4163	0.1039859360457768	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	7285	37.24956	32
GCGGCAC	7545	35.93812	33
CCCGTCG	7430	35.098347	44
TCGCCGG	7450	34.765556	48
CGGCACC	7885	34.404957	34
CCGTCGC	7550	34.331367	45
ACCCGCG	8390	32.681892	25
CCCCCGA	8475	32.61049	19
GCACCCC	8435	32.477345	36
TGGCCGT	1575	32.44918	70
CACCCCC	8605	31.771467	37
CCCCGAC	8820	31.384203	20
CCGCGCG	9055	30.316364	27
GTGCCGT	700	29.766619	1
CGTCGCC	8820	29.523468	46
CCCCCGT	8990	29.052288	42
ATGGCCG	1440	29.047258	69
GGCACCC	9355	29.012997	35
GCGCGGG	8930	28.94721	62
CCCGCGC	9585	28.766956	26