EGAF00005318386 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318386
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3173367
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	56

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	11555	0.3641242881771947	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	5559	0.17517671293613377	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	5263	0.1658490808028192	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	4889	0.15406349155329338	No Hit
CGTTTGAATATTTGCTACTACCACCAAGATCTGCACCTGCGGCGGCTCCACCCGGGCCCGCGCCCTAGGCTTCA	4588	0.14457829806637557	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	4071	0.12828645410379574	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	3675	0.11580759489841547	No Hit
CCTTGGTCCGTGTTACAAGACGGGTCGGGTGGGTAGCCGACGTCGCCGCC	3512	0.11067109477094833	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	3409	0.10742533088672064	No Hit
CGCCTTAGGACACCTGCGTTACCGTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGGCACTGTCCCCGG	3191	0.10055565586961734	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	1345	0.0	40.173096	70
CGTACGT	160	0.0	34.603218	19
GTCCGTT	205	0.0	33.75072	2
CGCGGCA	3575	0.0	32.970715	32
TCGCCGG	3440	0.0	32.715782	48
CCCGTCG	3485	0.0	32.641422	44
CCGTCGC	3490	0.0	32.599308	45
GCGGCAC	3695	0.0	31.812157	33
ATGGCCG	1425	0.0	31.036127	69
TACGCGT	45	0.004562452	30.750656	2
CGGCACC	3845	0.0	30.664684	34
GTTCTCG	1730	0.0	30.391804	13
TCGCCGT	245	0.0	29.760347	1
CACCCCC	4165	0.0	28.663485	37
GCACCCC	4195	0.0	28.44995	36
CGCCCTA	1880	0.0	27.672033	61
GTACGGC	990	0.0	27.602657	14
CCGATCC	745	0.0	27.5335	70
CCCCCGA	4370	0.0	27.397512	19
GTTCCGT	280	0.0	27.28032	1