EGAF00005318408 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318408
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3092119
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	56

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	16448	0.5319329560084848	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	13398	0.4332950963400827	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	13295	0.4299640473086579	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	11065	0.3578452187642196	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	7847	0.2537741917435907	No Hit
GGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTT	5812	0.18796171816155846	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	5630	0.18207578686331283	No Hit
GTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACG	4889	0.15811163800616987	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4622	0.14947678274995238	No Hit
TGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTCAGG	4598	0.14870061598534856	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	4410	0.14262064299595198	No Hit
GACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTG	3951	0.1277764536229039	No Hit
GTGGCTTAGGAGCTTGAAGTTGACCGGGTCCACCCGAAGCTTGTGCGCGT	3907	0.12635348122113024	No Hit
CGTTTGAATATTTGCTACTACCACCAAGATCTGCACCTGCGGCGGCTCCACCCGGGCCCGCGCCCTAGGCTTCA	3836	0.12405732120917727	No Hit
GTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCCTGCACTGGTGGGGTGAATTCTTTGCC	3684	0.1191415983666864	No Hit
GTGCGCGTGCAGGTCGCTCAGGGCGGACAGCGCGTTGGGCATGTCGTCCA	3560	0.11513140341623335	No Hit
GGGGGTACGGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGG	3242	0.1048471937852327	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGCTA	20	9.2654554E-5	67.83526	2
TGGCCGT	2705	0.0	50.294952	70
TTACGCG	35	0.0014679383	38.751675	15
TCAGGAT	2295	0.0	37.64174	70
CGCGGCA	5175	0.0	36.554153	32
GCGGCAC	5255	0.0	35.970722	33
CGGCACC	5260	0.0	35.906593	34
AGGACCG	1025	0.0	35.831944	70
CGTACGT	135	0.0	35.240807	19
ATGGCCG	3120	0.0	34.288628	69
TACGTAG	150	0.0	34.029827	21
TACGCGA	40	0.0028271277	33.907715	16
CCGTCGC	5250	0.0	32.920067	45
GGCACCC	5785	0.0	32.69116	35
CCCGTCG	5385	0.0	32.433514	44
TCGCCGG	5380	0.0	32.15399	48
TTATCGG	180	0.0	32.023956	7
CCTATCG	85	1.4044781E-7	31.922476	2
CCCCCGT	5415	0.0	31.834904	42
CTATCGA	75	1.9117142E-6	31.648232	3