EGAF00005318410 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318410
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3181989
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	56

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	17040	0.5355141076854759	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	14069	0.4421448345673099	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	13699	0.4305168873933883	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	11452	0.3599006784750042	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	8146	0.25600339913180087	No Hit
GGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTT	6026	0.18937840451365484	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	5722	0.1798246317004867	No Hit
GTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACG	5158	0.16209986898131956	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4775	0.15006337231209788	No Hit
TGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTCAGG	4706	0.14789491729858276	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	4414	0.13871826709646073	No Hit
GACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTG	4057	0.12749886941783894	No Hit
CGTTTGAATATTTGCTACTACCACCAAGATCTGCACCTGCGGCGGCTCCACCCGGGCCCGCGCCCTAGGCTTCA	3966	0.12463902295073931	No Hit
GTGGCTTAGGAGCTTGAAGTTGACCGGGTCCACCCGAAGCTTGTGCGCGT	3949	0.12410476591842398	No Hit
GTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCCTGCACTGGTGGGGTGAATTCTTTGCC	3780	0.11879362247952459	No Hit
GTGCGCGTGCAGGTCGCTCAGGGCGGACAGCGCGTTGGGCATGTCGTCCA	3671	0.11536809209585577	No Hit
GGGGGTACGGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGG	3422	0.107542797916649	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	2815	0.0	51.116554	70
CGCGGCA	5370	0.0	37.72737	32
TACGCGT	45	1.1074587E-4	37.687057	2
GCGGCAC	5425	0.0	37.19098	33
CGGCACC	5470	0.0	36.92051	34
TCAGGAT	2190	0.0	36.89933	70
AGGACCG	955	0.0	36.57651	70
ATGGCCG	3245	0.0	35.42255	69
CCGTCGC	5590	0.0	34.090023	45
CCCGTCG	5630	0.0	33.797783	44
CCCCCGT	5625	0.0	33.608143	42
TCGCCGG	5675	0.0	33.56825	48
GGCACCC	6060	0.0	33.478867	35
CCCCCGA	6125	0.0	33.015427	19
GCACCCC	6210	0.0	32.873302	36
ACCCGCG	6325	0.0	32.243114	25
CACCCCC	6535	0.0	31.28067	37
CCCCGAC	6570	0.0	30.85291	20
TATCGGA	225	0.0	30.147266	8
CCCCGTC	6355	0.0	29.953161	43