EGAF00005318412 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318412
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3150419
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	56

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	16691	0.5298025437251362	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	13717	0.43540240202969827	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	13249	0.4205472351455473	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	11245	0.3569366487441829	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	7967	0.2528869969359631	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	5861	0.18603874595728376	No Hit
GGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTT	5782	0.18353114300034376	No Hit
GTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACG	5140	0.16315290124900847	No Hit
TGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTCAGG	4680	0.14855166884150964	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4653	0.14769463998280863	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	4501	0.14286988492641772	No Hit
GACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTG	4047	0.12845910337640803	No Hit
GTGGCTTAGGAGCTTGAAGTTGACCGGGTCCACCCGAAGCTTGTGCGCGT	3891	0.12350738108169103	No Hit
CGTTTGAATATTTGCTACTACCACCAAGATCTGCACCTGCGGCGGCTCCACCCGGGCCCGCGCCCTAGGCTTCA	3878	0.12309473755713128	No Hit
GTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCCTGCACTGGTGGGGTGAATTCTTTGCC	3707	0.11766688811869151	No Hit
GTGCGCGTGCAGGTCGCTCAGGGCGGACAGCGCGTTGGGCATGTCGTCCA	3609	0.11455619077970264	No Hit
GGGGGTACGGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGG	3334	0.10582719314478486	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	2830	48.424393	70
AGGACCG	930	46.68147	70
GTTCCGT	260	37.902477	1
CGCGGCA	5090	35.674255	32
GCGGCAC	5205	34.928387	33
CGGCACC	5240	34.602283	34
ATGGCCG	3210	33.98157	69
TAGTCCG	275	33.307323	6
TATCGGA	265	33.28405	8
TTATCGG	280	32.71255	7
GTTATCG	285	32.13865	6
TCAGGAT	2300	31.838276	70
CCGTCGC	5275	31.835838	45
CCCGTCG	5285	31.786425	44
CGTACTA	205	31.442375	2
TCGCCGG	5370	31.431223	48
GGCACCC	5785	31.379017	35
CGCCCTA	1600	31.15783	61
CCCCCGT	5480	30.63463	42
TCGGAAT	280	30.2894	10