FastQCFastQC Report
Wed 8 May 2024
EGAF00005318416

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005318416
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3212893
Total Bases238.7 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG140910.43857669707643543No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN92870.2890541328329328No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG64910.20202975947222643No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGT38240.11902045913138098No Hit
GACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTG38120.11864696396674274No Hit
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG33060.10289791785783095No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)