FastQCFastQC Report
Wed 8 May 2024
EGAF00005318418

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005318418
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3298797
Total Bases245.1 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG142490.43194534249909894No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN94300.2858617853720614No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG64690.1961017910468574No Hit
GACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTG39990.12122601057294523No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGT38290.11607261677514562No Hit
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG33200.10064274946291027No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)