EGAF00005318436 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318436
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4496719
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	56

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	27970	0.6220090692791789	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	11522	0.25623126550713976	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	7208	0.16029465038842766	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	5761	0.12811563275356988	No Hit
GGGGGCAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	4876	0.10843461643923046	No Hit
TGGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCAC	4750	0.10563257343854486	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	4593	0.10214113890594453	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	4572	0.1016741317391636	No Hit
AGGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCAC	4556	0.10131831675494955	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	8135	37.795086	32
GCGGCAC	8425	36.62765	33
CGGCACC	8490	36.19741	34
CCGTCGC	8340	35.204475	45
TCGCCGG	8350	35.064083	48
CCCGTCG	8475	34.626175	44
GCACCCC	9200	33.50397	36
AGGACCG	1005	33.330116	70
GGCACCC	9595	32.077793	35
CCCCCGA	9710	32.045208	19
CACCCCC	9700	31.829454	37
GTGCCGT	750	31.778955	1
CGTACGT	350	31.539711	19
ACCCGCG	9890	31.26134	25
CCCCCGT	9870	29.733385	42
CCCCGAC	10520	29.550322	20
CGATCTA	390	28.617565	47
CGCCCTA	1810	28.091204	61
CGTCGCC	10755	27.288525	46
AGTCCGC	11525	27.13527	7