FastQCFastQC Report
Wed 8 May 2024
EGAF00005318447

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005318447
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3128396
Total Bases233.3 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT187920.6006912168408348No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTG108260.34605593409529994No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN53600.17133380812403545No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGA43080.13770635175342252No Hit
CGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT42380.13546878336374296No Hit
GGGCGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGC36670.11721661835649962No Hit
GGCGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT35810.11446760576346474No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)