FastQCFastQC Report
Wed 8 May 2024
EGAF00005318454

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005318454
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1210022
Total Bases90.6 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG24010.19842614431803718No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN22470.18569910299151585No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC20240.167269686005709No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCAC17140.14165031710167253No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT13690.11313843880524488No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG13320.11008064316185986No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)