EGAF00005318456 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318456
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1212162
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	2432	0.20063324869118154	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	2153	0.17761652320399418	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	1911	0.15765219500363814	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	1715	0.1414827391058291	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	1367	0.11277370516482119	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1367	0.11277370516482119	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	735	0.0	40.09282	32
TCGCCGG	775	0.0	37.39924	48
ACCCGCG	800	0.0	37.157467	25
CGTTGGA	235	0.0	36.898243	33
CGGCACC	800	0.0	36.862846	34
CCCGTCG	805	0.0	36.358627	44
GCGGCAC	815	0.0	36.17386	33
CCGTCGC	815	0.0	35.496838	45
CCCCCGA	860	0.0	34.101	19
CCCCGAC	885	0.0	33.15278	20
CCGCGCG	925	0.0	32.54492	27
CGGATAG	65	2.3364037E-5	31.8166	14
TCGCGAT	45	0.0042565404	31.188377	57
AATCGCG	45	0.0042758477	31.159548	55
CCCCCGT	925	0.0	30.862677	42
GCGACGA	45	0.0046466463	30.634409	5
TCGTTGG	300	0.0	30.046028	32
TTCGTTG	290	0.0	29.884151	31
TATTCGG	70	3.875656E-5	29.543983	10
GCGCGGG	1005	0.0	29.432833	62