FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005318458

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005318458
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1207795
Sequences flagged as poor quality0
Sequence length35-76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG23650.1958113752747776No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN21740.17999743333926702No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC20220.16741251619687114No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC16760.13876527059641744No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG14080.11657607458219316No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT13120.10862770586068No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)