FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005318460

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005318460
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1203822
Sequences flagged as poor quality0
Sequence length35-76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG24240.2013586726276808No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN21610.17951158892261482No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC20080.16680206874438247No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC17210.14296133481528No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG14020.11646240058746225No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT12950.10757404333863312No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)