EGAF00005318488 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318488
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3235917
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	18008	0.556503766938398	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	8477	0.2619659280506886	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4972	0.15365041810404903	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	4320	0.13350157003408927	No Hit
CGTTTGAATATTTGCTACTACCACCAAGATCTGCACCTGCGGCGGCTCCACCCGGGCCCGCGCCCTAGGCTTCA	3980	0.12299450202214704	No Hit
TGGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCAC	3960	0.12237643919791515	No Hit
AGGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCAC	3632	0.11224020888051207	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	3437	0.10621409634425111	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	5825	0.0	35.204517	32
GCGGCAC	5915	0.0	34.679626	33
CGGCACC	6145	0.0	33.44942	34
CCGTCGC	5915	0.0	32.370502	45
TCGCCGG	5910	0.0	32.106045	48
CCCGTCG	6075	0.0	31.730343	44
GCACCCC	6685	0.0	30.872723	36
CGCGCTA	115	1.6534614E-9	30.086826	28
TACGGTC	115	1.6734703E-9	30.053751	1
CCCCCGA	6935	0.0	29.8393	19
CACCCCC	6925	0.0	29.815739	37
GGCACCC	6995	0.0	29.495817	35
CGTACGT	240	0.0	28.789028	19
GGCGATC	1175	0.0	27.966581	70
GCGTATA	75	6.131487E-5	27.623358	5
ACCCGCG	7485	0.0	27.444807	25
CGCCCTA	1660	0.0	27.387503	61
GTAGCGT	390	0.0	26.56174	10
AGTCCGC	7980	0.0	26.395315	7
CAGTCCG	7645	0.0	26.377193	6