FastQCFastQC Report
Wed 8 May 2024
EGAF00005318489

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005318489
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3235917
Total Bases242.8 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC58

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT96160.297164605890695No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC45030.1391568448758111No Hit
GGGGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCC41920.1295459679590051No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)