EGAF00005318501 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318501
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3509452
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	57

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	14728	0.4196666602079185	No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	12808	0.3649572639830948	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	12493	0.3559815036649597	No Hit
GGGGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG	8841	0.25191967292899287	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	7210	0.20544518061509318	No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTT	6311	0.1798286456119075	No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC	4192	0.11944884842419842	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTCTACG	1860	60.760983	4
TCTACGG	1930	58.562233	5
TACGGCC	1955	57.63792	7
CTACGGC	2100	53.658157	6
GCGCGGT	6655	53.227215	9
TGGCGCG	7005	50.664684	15
CCGAACT	1150	50.058895	67
CGCGGTG	7175	49.321606	10
GCCATAC	2280	49.268738	11
CGGCCAT	2350	48.241047	9
GCCGGTT	1220	48.012352	3
CCATACC	2350	47.945736	12
ACGGCCA	2385	47.679626	8
CGGTTCA	1225	47.539185	5
GGGTCTA	1935	47.36577	2
CATACCA	2450	46.128746	13
GAACGCG	2410	46.007877	24
TGAACGC	2440	45.568115	23
CGTGCCT	7855	45.457348	20
CCGGTTC	1290	45.13993	4