FastQCFastQC Report
Wed 8 May 2024
EGAF00005318503

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005318503
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3485845
Total Bases259.4 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC59

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT227240.6518935867773811No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN170430.48892019008303583No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTG164000.4704741604976698No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGA53750.1541950373582302No Hit
CGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT49640.14240449589697765No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC44960.12897876985350754No Hit
GGCGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT44220.12685589864150587No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)