FastQCFastQC Report
Wed 8 May 2024
EGAF00005318507

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005318507
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3545266
Total Bases263.8 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC59

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT230390.6498525075410421No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTG173770.4901465785642036No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN171510.4837718805866753No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGA55100.15541852148752733No Hit
CGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT51650.1456872347519199No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC47640.13437637683603995No Hit
GGCGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT44300.12495536301084319No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)