EGAF00005318509 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318509
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3519476
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	59

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	16788	0.4770028265571352	No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	16161	0.4591876745288219	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	11313	0.32143989616636115	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	9478	0.2693014528299099	No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTT	4956	0.14081641698934727	No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC	4674	0.1328038605746992	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGCGGT	5600	50.7056	9
CCGAACT	895	50.046707	67
GCCGGTT	895	49.42741	3
TGGCGCG	5725	49.418076	15
GGGGACT	4365	46.37772	1
CGCGGTG	6270	45.2326	10
GGACTCT	4385	44.263733	3
TCTGGTC	4165	43.885983	10
ACTCTTC	4395	43.383995	5
CGTGCCT	6645	43.081913	20
CGGTTCA	1015	42.909286	5
GTCTACG	520	42.86583	4
CGAACTT	1100	42.683342	68
CTACTCG	6790	42.488758	37
GGGACTC	4650	42.404907	2
TACTCGG	6825	42.203903	38
TCTACGG	505	42.10308	5
GTAGTCC	6845	41.780148	27
TAGTCCC	6850	41.77786	28
TGTAGTC	6855	41.700027	26