EGAF00005318538 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318538
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3090602
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	15592	0.5044971821023865	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	14134	0.4573219068647468	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	6551	0.21196517701082182	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4199	0.13586349843816836	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	4070	0.13168955433278048	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	3490	0.11292298393646286	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	3225	0.10434860263469706	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	3147	0.10182482247795091	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	1660	40.81491	70
CGCGGCA	4670	36.662724	32
GCGGCAC	4785	35.74786	33
TCGCCGG	4815	34.008877	48
CGGCACC	5040	33.84028	34
CCGTCGC	4865	33.160053	45
CCCGTCG	4910	32.817165	44
GCACCCC	5645	30.83261	36
CCCCCGA	5630	30.206724	19
CACCCCC	5775	29.990042	37
ACCCGCG	5740	29.88145	25
ATGGCCG	1785	29.641235	69
GTCGATT	265	29.620213	21
TATCGGA	235	28.946568	8
GGCACCC	6050	28.33544	35
GTTATCG	230	28.09705	6
TTATCGG	245	27.765076	7
CGTTCGT	200	27.248762	1
AGGACCG	590	27.17474	70
CCCCGAC	6355	26.670326	20