EGAF00005318542 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318542
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3364080
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	22653	0.673378754369694	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	8096	0.24066015076930394	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	7014	0.2084968252835842	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	5991	0.17808732253691945	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	5239	0.15573351406625288	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	4859	0.1444377065943735	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	3618	0.10754797745594635	No Hit
GGGGGCAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	3605	0.10716154193717152	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	3546	0.10540771919811659	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	3537	0.10514018691588785	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	6175	0.0	36.94652	32
GCGGCAC	6430	0.0	35.662067	33
CGGCACC	6545	0.0	34.950054	34
TCGCCGG	6255	0.0	34.22454	48
CCGTCGC	6475	0.0	33.08957	45
CCCGTCG	6515	0.0	33.024643	44
CCCCCGA	7140	0.0	32.4611	19
GCACCCC	7035	0.0	32.446888	36
CGCGCTA	65	2.2995155E-5	31.893202	28
CACCCCC	7315	0.0	31.225538	37
ACCCGCG	7545	0.0	30.414263	25
GGCACCC	7585	0.0	30.032595	35
CCCCGAC	7715	0.0	29.918114	20
CCGCGCG	8345	0.0	27.64245	27
TCGCCGT	370	0.0	27.059845	1
CGTCGCC	7930	0.0	27.040339	46
AGTCCGC	8560	0.0	27.008986	7
GTTATCG	220	0.0	26.58514	6
CAGTCCG	8345	0.0	26.550474	6
CCCGACC	8710	0.0	26.55022	21