EGAF00005318544 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318544
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3371051
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	22426	0.6652524687404611	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	7910	0.23464492231057912	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	7153	0.21218901760904832	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	5866	0.17401101318253567	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	4895	0.14520693991280464	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	4891	0.1450882825563897	No Hit
GGGGGCAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	3668	0.10880879583251633	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	3633	0.10777054396388544	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	3504	0.10394384421950305	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	3434	0.10186734048224129	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	6240	0.0	38.410133	32
GCGGCAC	6515	0.0	36.910084	33
AGGACCG	575	0.0	36.56261	70
TCGCCGG	6210	0.0	36.157867	48
CGGCACC	6720	0.0	35.851784	34
CCGTCGC	6470	0.0	34.832054	45
CCCGTCG	6525	0.0	34.619274	44
GCACCCC	7280	0.0	33.178867	36
CCCCCGA	7330	0.0	32.834442	19
ACCCGCG	7410	0.0	32.316906	25
GGCACCC	7555	0.0	31.858261	35
CACCCCC	7610	0.0	31.851377	37
CCCCGAC	7965	0.0	30.267645	20
CCGCGCG	8315	0.0	28.909288	27
CCTATCG	60	5.526635E-4	28.658394	2
CGTCGCC	8065	0.0	27.924137	46
CCCGACC	8735	0.0	27.571587	21
ACCCCCC	8775	0.0	27.477585	38
GTACGGC	515	0.0	27.37891	14
GTACGGG	1005	0.0	27.374777	5