EGAF00005318546 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318546
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3413868
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	22741	0.6661358904327876	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	8093	0.2370624757606328	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	7276	0.2131306775774576	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	6009	0.17601735040722138	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	5099	0.14936136956672022	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	5047	0.14783817066154872	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	3790	0.11101776635769163	No Hit
GGGGGCAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	3683	0.10788349168743488	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	3649	0.10688755394174583	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	3524	0.10322601811200667	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	6505	0.0	38.104633	32
GCGGCAC	6740	0.0	36.690144	33
TCGCCGG	6515	0.0	36.09052	48
CGGCACC	6965	0.0	35.531685	34
CCGTCGC	6690	0.0	35.167007	45
CCCGTCG	6745	0.0	35.165085	44
GCACCCC	7345	0.0	33.8791	36
CCCCCGA	7585	0.0	32.761665	19
CACCCCC	7680	0.0	32.470062	37
ACCCGCG	7685	0.0	32.365227	25
GGCACCC	7830	0.0	31.758945	35
CCCCGAC	8045	0.0	30.89885	20
CCGCGCG	8590	0.0	29.019478	27
CGTCGCC	8220	0.0	28.684734	46
AGTCCGC	8800	0.0	28.327772	7
CAGTCCG	8575	0.0	27.988419	6
GTGCCGT	610	0.0	27.7168	1
CCCGACC	9000	0.0	27.702755	21
TACGCGG	50	0.007731993	27.60367	1
TCCGCCC	9260	0.0	27.477135	9