FastQCFastQC Report
Wed 8 May 2024
EGAF00005318547

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005318547
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3413868
Total Bases255 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC58

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT101230.29652581763559693No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTG88210.2583872604330337No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN72530.2124569549847856No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC46390.13588691771328007No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)