EGAF00005318548 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318548
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3365861
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	22239	0.6607224719024345	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	7923	0.23539296483128685	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	7079	0.2103176572056897	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	6034	0.17927062347494446	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	5100	0.15152140863808697	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	5040	0.14973880383058005	No Hit
GGGGGCAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	3785	0.1124526532735606	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	3700	0.10992729646292583	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	3690	0.10963019566167467	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	3499	0.1039555703577777	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	6495	39.050945	32
GCGGCAC	6610	38.278316	33
CGTACGT	180	38.248283	19
CGGCACC	6850	37.106564	34
TCGCCGG	6435	36.69102	48
GTTATCG	285	36.194748	6
CCGTCGC	6555	35.819283	45
CCCGTCG	6625	35.52145	44
CGTTCGT	205	35.513985	1
TATCGGA	305	34.948177	8
GCACCCC	7325	34.505356	36
TTATCGG	300	34.38501	7
CCCCCGA	7535	33.578285	19
ACCCGCG	7610	33.17743	25
CACCCCC	7660	32.888668	37
GGCACCC	7730	32.670036	35
CCCCGAC	8020	31.59908	20
CGATCTA	230	30.388704	47
CGCCCTA	1045	30.138401	61
GTACGTA	240	30.128605	20