EGAF00005318549 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318549
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3365861
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	58

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	7991	0.23741325027979465	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	7032	0.2089212834398093	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	5325	0.15820617666623787	No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC	4409	0.13099174327163243	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	3488	0.10362875947640143	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGCGGT	3110	48.2089	9
TGGCGCG	3280	45.49652	15
CCGAACT	485	39.093727	67
CTACTCG	3870	39.08686	37
TACTCGG	3910	38.619743	38
CGCGGTG	4000	37.654358	10
TAGTCCC	4030	37.611805	28
GTAGTCC	4015	37.384293	27
CGTGCCT	4050	37.06164	20
AGGATCG	4030	36.70941	59
GATCGCT	4105	36.28679	61
ACTCGGG	4315	36.22946	39
GGGGACT	3550	36.028168	1
TGTAGTC	4160	35.9886	26
CGGGTAG	410	35.506645	1
CGGGACT	680	35.170975	1
CGGTATG	280	34.661247	1
ACTCTTC	2815	34.44862	5
GCCGGTT	560	34.38088	3
TCTGGTC	2725	34.19825	10