EGAF00005318552 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318552
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3795076
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	15946	0.42017603863532643	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	5548	0.146189430725498	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	4375	0.11528095880029808	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	4295	0.11317296412509262	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4120	0.10856172577308071	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	4640	35.928753	32
GCGGCAC	4855	34.342667	33
CGGCACC	4950	33.47614	34
TCGCCGG	4670	33.470245	48
CCCGTCG	4810	32.68463	44
CCGTCGC	4775	32.564304	45
TTCGTTG	540	32.149113	31
ACCCGCG	5435	31.212572	25
CGTTGGA	560	31.014442	33
GATTTCG	485	30.055008	28
AAACGGG	560	29.169758	39
CCCCCGA	5895	28.758017	19
GCACCCC	5850	28.51089	36
GTGCCGT	590	28.44894	1
CCCCGAC	5970	28.39973	20
CCGCGCG	6010	28.178282	27
CACCCCC	5975	27.859219	37
GGCACCC	6215	26.721836	35
CCCGCGC	6385	26.574179	26
CGTCGCC	5890	26.524542	46