FastQCFastQC Report
Wed 8 May 2024
EGAF00005318562

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005318562
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3227470
Total Bases240.8 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG147040.4555890527255095No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN112690.3491589387352942No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG47910.1484444471985797No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGT41810.1295441940591237No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)