EGAF00005318566 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318566
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3388881
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	12980	0.38301728505663074	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	6185	0.18250862157744696	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	4392	0.12960030169250558	No Hit
GACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTG	4273	0.12608881810839626	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	3429	0.10118384210009145	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	2270	47.517216	70
AGGACCG	740	40.45077	70
ATGGCCG	2400	35.50947	69
CGCGGCA	3880	35.4302	32
GCGGCAC	4025	34.42354	33
CGGCACC	4225	33.0482	34
GACGTAT	460	32.502617	44
GTTCCGT	355	32.035778	1
TCGCCGG	4060	31.888147	48
CCCGTCG	4085	31.748592	44
CCGTCGC	4065	31.672333	45
ACGTATC	470	31.094982	45
CCCCCGA	4730	29.444569	19
GCACCCC	4825	29.324612	36
CGTATCA	500	29.256414	46
CGTACGT	180	28.656958	19
CGCCCTA	1340	28.62009	61
TCGGATA	510	28.462448	34
GTATGGC	2740	28.421137	67
TATGGCC	2815	28.323112	68