EGAF00005318578 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318578
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3672477
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	19786	0.5387644361013016	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	7890	0.2148413727301764	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	6967	0.1897084719659238	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	5443	0.14821059464769962	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	5264	0.14333650013328877	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	5018	0.1366380238732605	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	4717	0.12844192080712827	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	4163	0.11335673443291817	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	3790	0.1032001017297045	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	5700	0.0	36.038845	32
GCGGCAC	5825	0.0	35.400955	33
TGGCCGT	1215	0.0	35.199688	70
TCGCCGG	5605	0.0	34.04232	48
CGGCACC	5990	0.0	33.97134	34
CCCGTCG	5790	0.0	33.054142	44
CCGTCGC	5915	0.0	32.317684	45
ACCCGCG	6530	0.0	31.562773	25
CCCCCGA	6665	0.0	30.856295	19
GCACCCC	6660	0.0	30.643345	36
ATGGCCG	1105	0.0	29.360853	69
CCCCGAC	7040	0.0	29.320953	20
CACCCCC	7065	0.0	29.049294	37
GGCACCC	7125	0.0	28.917036	35
TTCCTCG	1025	0.0	28.536207	4
CGTACGT	145	2.3646862E-11	28.509056	19
TACGGGT	730	0.0	27.811876	6
GTGCCGT	675	0.0	27.627447	1
CGCTTCC	985	0.0	27.346964	1
CGTCGCC	7100	0.0	26.89068	46