EGAF00005318580 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318580
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3656728
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	19592	0.5357795274901497	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	7883	0.2155752355657845	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	6986	0.19104510917957257	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	5478	0.14980605612449163	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	5147	0.14075424806001433	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	4905	0.1341363098376472	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	4704	0.12863959255378032	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	3989	0.10908659326042298	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	3834	0.10484783117584902	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	5905	38.48153	32
GCGGCAC	6185	36.700645	33
TCGCCGG	5965	35.565918	48
CCCGTCG	6040	35.31776	44
CGGCACC	6405	35.18165	34
CCGTCGC	6090	34.708958	45
ACCCGCG	6765	33.83597	25
CCCCCGA	6810	33.74882	19
GCACCCC	6960	32.520287	36
GTTCCGT	365	32.303677	1
CACCCCC	7095	32.116753	37
CCCCGAC	7300	31.538048	20
GGCACCC	7430	30.300356	35
CCGCGCG	7770	29.617645	27
TGGCCGT	1310	29.520218	70
CGTCGCC	7335	28.981659	46
CCCGCGC	8080	28.42409	26
ATGGCCG	1070	28.125809	69
AGTCCGC	8390	27.769663	7
CAGTCCG	8210	27.414383	6