FastQCFastQC Report
Fri 10 May 2024
EGAF00005318592

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005318592
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3087415
Total Bases229.8 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG163340.5290510022138262No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN101360.328300536209094No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG65460.21202203137576256No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGT43630.14131563136151115No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA42980.13921031024335892No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC32560.10546039324159531No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)