FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005318594

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005318594
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3094346
Sequences flagged as poor quality0
Sequence length35-76
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG165410.534555605611008No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN101860.3291810288830015No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG65290.21099773587052No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA43670.14112836767446174No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG33060.10684002370775603No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC32370.10461015025469032No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)